Decomposition

Decomposition module for dimensionality reduction of molecular dynamics data.

This module provides tools for performing dimensionality reduction on feature matrices from molecular dynamics trajectories.

• Decomposition Types
  • Contact Kernel PCA
    • Contact Kernel PCA Data
    • Contact Kernel PCA Calculator
  • Diffusion Maps
    • Diffusion Maps Data
    • Diffusion Maps Calculator
  • Kernel PCA
    • Kernel PCA Data
    • Kernel PCA Calculator
  • PCA
    • PCA Data
    • PCA Calculator
  • Interfaces
    • Calculator Base
    • Decomposition Types Base
    • Decomposition Types Meta
  • Decomposition Type Helper
• Decomposition Entities
• Decomposition Manager
• Decomposition Services