Clustering

Three density-based clustering algorithms:

• DPA (Density Peak Advanced)

• DBSCAN (Density-Based Spatial Clustering of Applications with Noise)

• HDBSCAN (Hierarchical DBSCAN)

# Density Peak Advanced (DPA) - automatic cluster number detection
# In our personal experience often good results and easy to use.
pipeline.clustering.add.dpa(
    selection_name="ContactKernelPCA", Z=3.0
)

# DBSCAN
pipeline.clustering.add.dbscan(
    selection_name="my_decomposition", eps=0.5, min_samples=5
)

# HDBSCAN
pipeline.clustering.add.hdbscan(
    selection_name="my_decomposition", min_cluster_size=10
)